IMAT Biology · Microorganisms and Biotechnology
Fungi, Protists, Pathogens, Antibiotics and Vaccines
Fungi and protists are eukaryotic microbes; bacteria, viruses, fungi and protists can all be pathogens, fought with antibiotics (bacteria only) and prevented with vaccines.
Why this matters
No past IMAT question in this chapter has asked about fungi, protists, antibiotics or vaccines yet. They are on the syllabus and are classic one-fact questions, so a short table each is enough.
Concept 1 of 4: Fungi and protists in outline
Definition
Fungi:
- Eukaryotic, with cell walls made of chitin (not cellulose).
- Heterotrophic: most are saprotrophs, which secrete enzymes onto dead matter and absorb the products. They store carbohydrate as glycogen, not starch.
- Moulds and mushrooms are made of threads called hyphae, which form a mycelium; they reproduce with spores.
- Yeasts are single-celled fungi that reproduce by budding; without oxygen they ferment sugar to ethanol and carbon dioxide (bread, beer, wine).
- Penicillium is the mould in which Fleming found penicillin (1928).
Protists: eukaryotes, mostly single-celled. Some are animal-like (protozoa, such as Amoeba, Paramecium, Plasmodium), some are plant-like (algae, which photosynthesise).
| Group | Cells and wall | Nutrition | Examples |
|---|---|---|---|
| Yeasts (fungi) | Single eukaryotic cells, chitin wall | Heterotrophic; respire aerobically or ferment | Saccharomyces cerevisiae (baker's yeast), Candida |
| Moulds and mushrooms (fungi) | Hyphae forming a mycelium, chitin walls | Saprotrophic or parasitic | Penicillium, Rhizopus (bread mould), field mushrooms |
| Protozoa (protists) | Single eukaryotic cells, no wall | Heterotrophic, take in food | Amoeba, Paramecium, Plasmodium, Trypanosoma |
| Algae (protists) | Single or many cells, usually cellulose walls | Photosynthetic (autotrophic) | Chlamydomonas, diatoms, seaweeds |
Practice this conceptself-check · 4 quick reps
Fungi are not plants, and yeast is not a prokaryote
Concept 2 of 4: Pathogens and the diseases they cause
Definition
- A pathogen is an organism or agent that causes disease: bacteria, viruses, fungi, protists and also prions (misfolded proteins with no nucleic acid, the cause of CJD and BSE).
- Communicable diseases pass from one host to another: by droplets in the air, contaminated water or food, body fluids, direct contact, or a vector.
- A vector is an organism that carries a pathogen between hosts, such as the mosquito for malaria. The vector is not the cause of the disease.
- Many bacteria cause disease with toxins: cholera toxin makes the gut lose water and salts, causing severe diarrhoea.
| Disease | Pathogen | Type | How it spreads |
|---|---|---|---|
| Tuberculosis | Mycobacterium tuberculosis | Bacterium | Airborne droplets |
| Cholera | Vibrio cholerae | Bacterium | Contaminated water |
| Influenza | Influenza virus | RNA virus | Airborne droplets |
| COVID-19 | SARS-CoV-2 | RNA virus (coronavirus) | Droplets and aerosols |
| AIDS | HIV | Retrovirus | Blood, sex, mother to baby |
| Malaria | Plasmodium | Protist | Bite of an infected female Anopheles mosquito |
| Athlete's foot, ringworm | Several skin fungi | Fungus | Direct contact, shared surfaces |
Practice this conceptself-check · 4 quick reps
The mosquito is the vector, not the cause, of malaria
Concept 3 of 4: Antibiotics and antibiotic resistance
Definition
- An antibiotic kills bacteria (bactericidal) or stops them growing (bacteriostatic). Many were first found in fungi or other bacteria.
- It works by selective toxicity: it hits a bacterial target with no exact human equivalent.
- Antibiotics do not work against viruses, which have no wall and use the host's ribosomes.
How resistance spreads:
- A random mutation gives a few bacteria a resistance allele, before any drug is present.
- The antibiotic kills the sensitive bacteria; the resistant ones survive and multiply (selection).
- Resistance genes on plasmids spread to other bacteria, even other species, by conjugation, transformation and transduction.
- Mechanisms: an enzyme that destroys the drug (β-lactamase breaks down penicillin), pumps that push it out, or a changed target.
- Overuse speeds this up: antibiotics for viral infections, unfinished courses, routine use in farm animals. MRSA (methicillin-resistant Staphylococcus aureus) is a well-known result.
| Antibiotic | Target in the bacterium | Why human cells are spared |
|---|---|---|
| Penicillin and other β-lactams | Block cross-linking of peptidoglycan as the wall is built; the cell bursts by osmosis | Human cells have no cell wall |
| Tetracycline, streptomycin, erythromycin | Bind 70S ribosomes and block protein synthesis | Human cytoplasm has 80S ribosomes |
| Ciprofloxacin (quinolones) | Block DNA gyrase, so DNA cannot be copied | Human enzymes of this kind are different |
| Sulfonamides | Block the bacterium's synthesis of folic acid | Humans take folic acid from food |
Practice this conceptself-check · 4 quick reps
Antibiotics select resistance; they do not cause it
Concept 4 of 4: Vaccines and types of immunity
Definition
- A vaccine contains antigens (or instructions to make them) that start a primary immune response and leave memory B and T cells.
- On real infection the secondary response is faster, stronger and longer. Boosters raise the level of memory again.
- Active immunity: your own body makes antibodies and memory cells. Natural (after infection) or artificial (after a vaccine). Slow to start, long-lasting.
- Passive immunity: ready-made antibodies are received. Natural (across the placenta, in breast milk) or artificial (an injection of antibodies, such as antivenom). Immediate but short-lived, with no memory cells.
- Herd immunity: when enough people are immune, the pathogen cannot spread, which protects those who cannot be vaccinated.
- Jenner (1796) used cowpox to protect against smallpox; smallpox was declared eradicated in 1980.
| Vaccine type | What it contains | Examples |
|---|---|---|
| Live attenuated | A weakened living pathogen | Measles, mumps and rubella (MMR); oral polio |
| Inactivated | Killed pathogen | Injected polio, most flu vaccines |
| Toxoid | A bacterial toxin made harmless | Tetanus, diphtheria |
| Subunit (recombinant) | One purified antigen, often made by genetically modified yeast | Hepatitis B, HPV |
| mRNA | mRNA coding for one viral protein, inside lipid droplets | The first COVID-19 vaccines (2020) |
Practice this conceptself-check · 4 quick reps
Passive immunity has no memory
Summary — formulas & gotchas at a glance
A revision cheat-sheet for the formulas and gotchas above. Click any concept name to jump back to its full explanation.
Reference tables (4)
Fungi and protists in outline4 rows
| Group | Cells and wall | Nutrition | Examples |
|---|---|---|---|
| Yeasts (fungi) | Single eukaryotic cells, chitin wall | Heterotrophic; respire aerobically or ferment | Saccharomyces cerevisiae (baker's yeast), Candida |
| Moulds and mushrooms (fungi) | Hyphae forming a mycelium, chitin walls | Saprotrophic or parasitic | Penicillium, Rhizopus (bread mould), field mushrooms |
| Protozoa (protists) | Single eukaryotic cells, no wall | Heterotrophic, take in food | Amoeba, Paramecium, Plasmodium, Trypanosoma |
| Algae (protists) | Single or many cells, usually cellulose walls | Photosynthetic (autotrophic) | Chlamydomonas, diatoms, seaweeds |
Pathogens and the diseases they cause7 rows
| Disease | Pathogen | Type | How it spreads |
|---|---|---|---|
| Tuberculosis | Mycobacterium tuberculosis | Bacterium | Airborne droplets |
| Cholera | Vibrio cholerae | Bacterium | Contaminated water |
| Influenza | Influenza virus | RNA virus | Airborne droplets |
| COVID-19 | SARS-CoV-2 | RNA virus (coronavirus) | Droplets and aerosols |
| AIDS | HIV | Retrovirus | Blood, sex, mother to baby |
| Malaria | Plasmodium | Protist | Bite of an infected female Anopheles mosquito |
| Athlete's foot, ringworm | Several skin fungi | Fungus | Direct contact, shared surfaces |
Antibiotics and antibiotic resistance4 rows
| Antibiotic | Target in the bacterium | Why human cells are spared |
|---|---|---|
| Penicillin and other β-lactams | Block cross-linking of peptidoglycan as the wall is built; the cell bursts by osmosis | Human cells have no cell wall |
| Tetracycline, streptomycin, erythromycin | Bind 70S ribosomes and block protein synthesis | Human cytoplasm has 80S ribosomes |
| Ciprofloxacin (quinolones) | Block DNA gyrase, so DNA cannot be copied | Human enzymes of this kind are different |
| Sulfonamides | Block the bacterium's synthesis of folic acid | Humans take folic acid from food |
Vaccines and types of immunity5 rows
| Vaccine type | What it contains | Examples |
|---|---|---|
| Live attenuated | A weakened living pathogen | Measles, mumps and rubella (MMR); oral polio |
| Inactivated | Killed pathogen | Injected polio, most flu vaccines |
| Toxoid | A bacterial toxin made harmless | Tetanus, diphtheria |
| Subunit (recombinant) | One purified antigen, often made by genetically modified yeast | Hepatitis B, HPV |
| mRNA | mRNA coding for one viral protein, inside lipid droplets | The first COVID-19 vaccines (2020) |
Watch out for (4)
- Fungi are not plants, and yeast is not a prokaryote→ Fungi and protists in outline
- The mosquito is the vector, not the cause, of malaria→ Pathogens and the diseases they cause
- Antibiotics select resistance; they do not cause it→ Antibiotics and antibiotic resistance
- Passive immunity has no memory→ Vaccines and types of immunity
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