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IMAT Biology · Microorganisms and Biotechnology

Fungi, Protists, Pathogens, Antibiotics and Vaccines

Fungi and protists are eukaryotic microbes; bacteria, viruses, fungi and protists can all be pathogens, fought with antibiotics (bacteria only) and prevented with vaccines.

Why this matters

No past IMAT question in this chapter has asked about fungi, protists, antibiotics or vaccines yet. They are on the syllabus and are classic one-fact questions, so a short table each is enough.

Concept 1 of 4: Fungi and protists in outline

Fungi and protists are eukaryotes, like us: they have a nucleus, mitochondria and 80S ribosomes. Fungi look a little like plants because they have cell walls and do not move, but they cannot photosynthesise; they feed by digesting food outside their bodies and absorbing it. Protists are the eukaryotes that are not plants, animals or fungi, mostly single cells.

Definition

Fungi:

  • Eukaryotic, with cell walls made of chitin (not cellulose).
  • Heterotrophic: most are saprotrophs, which secrete enzymes onto dead matter and absorb the products. They store carbohydrate as glycogen, not starch.
  • Moulds and mushrooms are made of threads called hyphae, which form a mycelium; they reproduce with spores.
  • Yeasts are single-celled fungi that reproduce by budding; without oxygen they ferment sugar to ethanol and carbon dioxide (bread, beer, wine).
  • Penicillium is the mould in which Fleming found penicillin (1928).

Protists: eukaryotes, mostly single-celled. Some are animal-like (protozoa, such as Amoeba, Paramecium, Plasmodium), some are plant-like (algae, which photosynthesise).

GroupCells and wallNutritionExamples
Yeasts (fungi)Single eukaryotic cells, chitin wallHeterotrophic; respire aerobically or fermentSaccharomyces cerevisiae (baker's yeast), Candida
Moulds and mushrooms (fungi)Hyphae forming a mycelium, chitin wallsSaprotrophic or parasiticPenicillium, Rhizopus (bread mould), field mushrooms
Protozoa (protists)Single eukaryotic cells, no wallHeterotrophic, take in foodAmoeba, Paramecium, Plasmodium, Trypanosoma
Algae (protists)Single or many cells, usually cellulose wallsPhotosynthetic (autotrophic)Chlamydomonas, diatoms, seaweeds
Practice this conceptself-check · 4 quick reps

Fungi are not plants, and yeast is not a prokaryote

Fungi have walls but no chlorophyll; the wall is chitin and the stored sugar is glycogen. Yeast is a single cell, but it is a eukaryote with a nucleus, mitochondria and 80S ribosomes.

Concept 2 of 4: Pathogens and the diseases they cause

A pathogen is anything that causes disease. Each kind does damage in its own way: viruses destroy the cells they multiply in, many bacteria release toxins, and parasites such as Plasmodium feed inside our cells. Knowing which kind of pathogen causes a disease tells you which treatment can work.

Definition

  • A pathogen is an organism or agent that causes disease: bacteria, viruses, fungi, protists and also prions (misfolded proteins with no nucleic acid, the cause of CJD and BSE).
  • Communicable diseases pass from one host to another: by droplets in the air, contaminated water or food, body fluids, direct contact, or a vector.
  • A vector is an organism that carries a pathogen between hosts, such as the mosquito for malaria. The vector is not the cause of the disease.
  • Many bacteria cause disease with toxins: cholera toxin makes the gut lose water and salts, causing severe diarrhoea.
DiseasePathogenTypeHow it spreads
TuberculosisMycobacterium tuberculosisBacteriumAirborne droplets
CholeraVibrio choleraeBacteriumContaminated water
InfluenzaInfluenza virusRNA virusAirborne droplets
COVID-19SARS-CoV-2RNA virus (coronavirus)Droplets and aerosols
AIDSHIVRetrovirusBlood, sex, mother to baby
MalariaPlasmodiumProtistBite of an infected female Anopheles mosquito
Athlete's foot, ringwormSeveral skin fungiFungusDirect contact, shared surfaces
Practice this conceptself-check · 4 quick reps

The mosquito is the vector, not the cause, of malaria

Malaria is caused by the protist Plasmodium. The Anopheles mosquito only carries it. Malaria is not caused by a bacterium or a virus, so antibiotics against bacteria are not the treatment; antimalarial drugs are.

Concept 3 of 4: Antibiotics and antibiotic resistance

An antibiotic is useful only if it harms the bacterium and not the patient. So antibiotics attack structures that bacteria have and our cells lack, or have in a different form: the peptidoglycan wall and the 70S ribosome are the favourite targets. Resistance is natural selection in action: the drug does not create resistant bacteria, it clears away the others.

Definition

  • An antibiotic kills bacteria (bactericidal) or stops them growing (bacteriostatic). Many were first found in fungi or other bacteria.
  • It works by selective toxicity: it hits a bacterial target with no exact human equivalent.
  • Antibiotics do not work against viruses, which have no wall and use the host's ribosomes.

How resistance spreads:

  • A random mutation gives a few bacteria a resistance allele, before any drug is present.
  • The antibiotic kills the sensitive bacteria; the resistant ones survive and multiply (selection).
  • Resistance genes on plasmids spread to other bacteria, even other species, by conjugation, transformation and transduction.
  • Mechanisms: an enzyme that destroys the drug (β-lactamase breaks down penicillin), pumps that push it out, or a changed target.
  • Overuse speeds this up: antibiotics for viral infections, unfinished courses, routine use in farm animals. MRSA (methicillin-resistant Staphylococcus aureus) is a well-known result.
AntibioticTarget in the bacteriumWhy human cells are spared
Penicillin and other β-lactamsBlock cross-linking of peptidoglycan as the wall is built; the cell bursts by osmosisHuman cells have no cell wall
Tetracycline, streptomycin, erythromycinBind 70S ribosomes and block protein synthesisHuman cytoplasm has 80S ribosomes
Ciprofloxacin (quinolones)Block DNA gyrase, so DNA cannot be copiedHuman enzymes of this kind are different
SulfonamidesBlock the bacterium's synthesis of folic acidHumans take folic acid from food
Practice this conceptself-check · 4 quick reps

Antibiotics select resistance; they do not cause it

The resistance allele already exists by random mutation. The antibiotic removes the competitors, so the resistant bacteria take over. Options saying the bacteria 'adapt', 'become immune' or are made to mutate by the drug are wrong, and so is any option where the patient becomes resistant.

Concept 4 of 4: Vaccines and types of immunity

A vaccine is a safe rehearsal. It shows the immune system an antigen from a pathogen without causing the disease, so the body makes memory cells. When the real pathogen arrives, those memory cells respond so fast that the person usually never falls ill. The detailed immune response is taught in the Human Anatomy and Physiology chapter.

Definition

  • A vaccine contains antigens (or instructions to make them) that start a primary immune response and leave memory B and T cells.
  • On real infection the secondary response is faster, stronger and longer. Boosters raise the level of memory again.
  • Active immunity: your own body makes antibodies and memory cells. Natural (after infection) or artificial (after a vaccine). Slow to start, long-lasting.
  • Passive immunity: ready-made antibodies are received. Natural (across the placenta, in breast milk) or artificial (an injection of antibodies, such as antivenom). Immediate but short-lived, with no memory cells.
  • Herd immunity: when enough people are immune, the pathogen cannot spread, which protects those who cannot be vaccinated.
  • Jenner (1796) used cowpox to protect against smallpox; smallpox was declared eradicated in 1980.
Vaccine typeWhat it containsExamples
Live attenuatedA weakened living pathogenMeasles, mumps and rubella (MMR); oral polio
InactivatedKilled pathogenInjected polio, most flu vaccines
ToxoidA bacterial toxin made harmlessTetanus, diphtheria
Subunit (recombinant)One purified antigen, often made by genetically modified yeastHepatitis B, HPV
mRNAmRNA coding for one viral protein, inside lipid dropletsThe first COVID-19 vaccines (2020)
Practice this conceptself-check · 4 quick reps

Passive immunity has no memory

Received antibodies work at once but are gone within weeks or months, and they leave no memory cells. Only active immunity, after infection or a vaccine, produces memory cells and lasting protection.

Summary — formulas & gotchas at a glance

A revision cheat-sheet for the formulas and gotchas above. Click any concept name to jump back to its full explanation.

Reference tables (4)

Fungi and protists in outline4 rows
GroupCells and wallNutritionExamples
Yeasts (fungi)Single eukaryotic cells, chitin wallHeterotrophic; respire aerobically or fermentSaccharomyces cerevisiae (baker's yeast), Candida
Moulds and mushrooms (fungi)Hyphae forming a mycelium, chitin wallsSaprotrophic or parasiticPenicillium, Rhizopus (bread mould), field mushrooms
Protozoa (protists)Single eukaryotic cells, no wallHeterotrophic, take in foodAmoeba, Paramecium, Plasmodium, Trypanosoma
Algae (protists)Single or many cells, usually cellulose wallsPhotosynthetic (autotrophic)Chlamydomonas, diatoms, seaweeds
Pathogens and the diseases they cause7 rows
DiseasePathogenTypeHow it spreads
TuberculosisMycobacterium tuberculosisBacteriumAirborne droplets
CholeraVibrio choleraeBacteriumContaminated water
InfluenzaInfluenza virusRNA virusAirborne droplets
COVID-19SARS-CoV-2RNA virus (coronavirus)Droplets and aerosols
AIDSHIVRetrovirusBlood, sex, mother to baby
MalariaPlasmodiumProtistBite of an infected female Anopheles mosquito
Athlete's foot, ringwormSeveral skin fungiFungusDirect contact, shared surfaces
Antibiotics and antibiotic resistance4 rows
AntibioticTarget in the bacteriumWhy human cells are spared
Penicillin and other β-lactamsBlock cross-linking of peptidoglycan as the wall is built; the cell bursts by osmosisHuman cells have no cell wall
Tetracycline, streptomycin, erythromycinBind 70S ribosomes and block protein synthesisHuman cytoplasm has 80S ribosomes
Ciprofloxacin (quinolones)Block DNA gyrase, so DNA cannot be copiedHuman enzymes of this kind are different
SulfonamidesBlock the bacterium's synthesis of folic acidHumans take folic acid from food
Vaccines and types of immunity5 rows
Vaccine typeWhat it containsExamples
Live attenuatedA weakened living pathogenMeasles, mumps and rubella (MMR); oral polio
InactivatedKilled pathogenInjected polio, most flu vaccines
ToxoidA bacterial toxin made harmlessTetanus, diphtheria
Subunit (recombinant)One purified antigen, often made by genetically modified yeastHepatitis B, HPV
mRNAmRNA coding for one viral protein, inside lipid dropletsThe first COVID-19 vaccines (2020)

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